Index B | C | E | F | G | L | M | P | R | S | T | U | W B Bernoulli (class in sincei.ExponentialFamily) Beta (class in sincei.ExponentialFamily) C checkAlignedFraction() (in module sincei.Utilities) checkBAMtag() (in module sincei.Utilities) checkGCcontent() (in module sincei.Utilities) checkMotifs() (in module sincei.Utilities) colorPicker() (in module sincei.Utilities) count_reads_in_region() (sincei.ReadCounter.CountReadsPerBin method) CountReadsPerBin (class in sincei.ReadCounter) E estimateSizeFactors() (in module sincei.ReadCounter) ExponentialFamily (class in sincei.ExponentialFamily) F fit() (sincei.GLMPCA.GLMPCA method) G Gamma (class in sincei.ExponentialFamily) Gaussian (class in sincei.ExponentialFamily) get_bins_by_gene() (in module sincei.RegionQuery) get_cell_topic() (sincei.TopicModels.TOPICMODEL method) get_coverage_of_region() (sincei.ReadCounter.CountReadsPerBin method) get_fragment_from_read() (sincei.ReadCounter.CountReadsPerBin method) get_gtf_adata_olaps() (in module sincei.RegionQuery) getDupFilterTuple() (in module sincei.Utilities) getReadLength() (sincei.ReadCounter.CountReadsPerBin method) getSmoothRange() (sincei.ReadCounter.CountReadsPerBin method) gini() (in module sincei.Utilities) GLMPCA (class in sincei.GLMPCA) L LogNormal (class in sincei.ExponentialFamily) M module sincei.ExponentialFamily sincei.GLMPCA sincei.multimodalClustering sincei.ReadCounter sincei.RegionQuery sincei.TopicModels sincei.Utilities sincei.WriteBedGraph multiModal_clustering() (in module sincei.multimodalClustering) P Poisson (class in sincei.ExponentialFamily) R remove_row_of_zeros() (in module sincei.ReadCounter) run() (sincei.ReadCounter.CountReadsPerBin method) (sincei.WriteBedGraph.WriteBedGraph method) runLDA() (sincei.TopicModels.TOPICMODEL method) runLSA() (sincei.TopicModels.TOPICMODEL method) S scaleCoverage() (in module sincei.WriteBedGraph) SigmoidBeta (class in sincei.ExponentialFamily) sincei.ExponentialFamily module sincei.GLMPCA module sincei.multimodalClustering module sincei.ReadCounter module sincei.RegionQuery module sincei.TopicModels module sincei.Utilities module sincei.WriteBedGraph module T TOPICMODEL (class in sincei.TopicModels) transform() (sincei.GLMPCA.GLMPCA method) U umap_aligned() (in module sincei.multimodalClustering) W WriteBedGraph (class in sincei.WriteBedGraph)
